Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDEVKPDIVTLDITMPEMDGLEALAQIMAKD--PSAKVIMCSAMGQQGMVVDAIKKGAKDFIVKPFQADRVLEALEKAAK
3OO0 Chain:A ((6-122))
-LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTPATLEEKLNK---
General information:
TITO was launched using:
RESULT:
Template:
3OO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65424 for 908 contacts (-72.1/contact) +
2D Compatibility (PS) -12648 + (NN) -9860 + (LL) 560
1D Compatibility (HY) -10000 + (ID) 2150
Total energy: -99522.0 ( -109.61 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_3OO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OO0-query.scw
PDB file :
Tito_Scwrl_3OO0.pdb
: