Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVDVILIQADFDDLASLTEIEKQVFQLDA----FIHAAGHAHYSLFQDTTDTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
4IIN Chain:C ((30-271))
-----KNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIET----------KADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGLYM
General information:
TITO was launched using:
RESULT:
Template:
4IIN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200701 for 1926 contacts (-104.2/contact) +
2D Compatibility (PS) -24672 + (NN) -5617 + (LL) 1412
1D Compatibility (HY) -12000 + (ID) 3700
Total energy: -245278.0 ( -127.35 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4IIN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IIN-query.scw
PDB file :
Tito_Scwrl_4IIN.pdb
: