Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIAIFASGSGSNFQALVDDEFIK--P-YVKLLVCDKPNAYVLERANKHDIPVFLFEAKNYPDKEAFETEILLELRRLEIDLLVLAGYMRLIGPTLLAEFPEQIVNLHPSLLPEFKGKDAIGQAIQANVSGTGVTAHFVDAGMDTGPIIDQVKVTIETAETTDTLAEKIHQVEHIFYPKVIRGLIQNGGND
2YWR Chain:A ((2-190))
LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGLHAQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQTVQWFAQDRI--
General information:
TITO was launched using:
RESULT:
Template:
2YWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152793 for 1503 contacts (-101.7/contact) +
2D Compatibility (PS) -20634 + (NN) -15136 + (LL) -156
1D Compatibility (HY) -17600 + (ID) 3350
Total energy: -209669.0 ( -139.50 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_2YWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YWR-query.scw
PDB file :
Tito_Scwrl_2YWR.pdb
: