Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKD-GFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1ZAK Chain:B ((6-211))
LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALET----LEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPP----ENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTY--ENIIVKVQGDATVDAVFAKIDELLGSI
General information:
TITO was launched using:
RESULT:
Template:
1ZAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37520 for 1515 contacts (-24.8/contact) +
2D Compatibility (PS) -22755 + (NN) -16011 + (LL) 296
1D Compatibility (HY) -15200 + (ID) 4100
Total energy: -95290.0 ( -62.90 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAK-query.scw
PDB file :
Tito_Scwrl_1ZAK.pdb
: