Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSKRLVLIVEDEDGISNFISAVLTASDYSVIKAVNGKEALEQTASHSPDVVLLDLGLPDMEGLDVLRDIRVW-SKVPIIVVSARDHEREKVTALDLGADDYITKPFGTSELLARIRTALRHIQPSSKESPNDHIIRIQDLYIDDDRRLVKMDDTEIHFTPIEYKILLLLARHAGKVLTHDFIIREIWGPYPSENQALRVNMSNIRRKIEKNPAEPAYILTEVGVGYRMAEE
1YS7 Chain:A ((7-232))
---SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSS-S-ETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFADTNVVDVFIGYLRRKLEAG---PRLLHTVRGVGFVLRM-
General information:
TITO was launched using:
RESULT:
Template:
1YS7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158385 for 1845 contacts (-85.8/contact) +
2D Compatibility (PS) -24072 + (NN) -14057 + (LL) 96
1D Compatibility (HY) -18400 + (ID) 3400
Total energy: -218218.0 ( -118.28 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1YS7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS7-query.scw
PDB file :
Tito_Scwrl_1YS7.pdb
: