Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGID-FIKTREPGGSPISEKVRNIVLG---IGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGR-DMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA---
4TMK Chain:A ((2-211))
-RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRG-IDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGEL--DRIEQESFDFFNRTRARYLELAAQD-KSIHTIDAT-QPLEAVMDAIRTTVTHWVKEL
General information:
TITO was launched using:
RESULT:
Template:
4TMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56579 for 1609 contacts (-35.2/contact) +
2D Compatibility (PS) -22291 + (NN) -9613 + (LL) 352
1D Compatibility (HY) -10000 + (ID) 3450
Total energy: -101581.0 ( -63.13 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4TMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TMK-query.scw
PDB file :
Tito_Scwrl_4TMK.pdb
: