Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MPVKDFMTKKLVYVSPDTTVAEAADLLREHHLRRLPVV-ENDQLLGLVTEGTMAEAQPSKATSLSIYEMNYLLNKTKIRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVDN-GQLYGIITDRDVFKAFLEIAGYGQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERKAGKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
1PVM Chain:A ((7-184))
MFMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKR---------FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSR------------------------------------YLSRASITDILLSHRTKDYQHLCPKCGVGVLEPVYNEKGEIKVFRCSNPACDYEE
General information:
TITO was launched using:
RESULT:
Template:
1PVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109917 for 1318 contacts (-83.4/contact) +
2D Compatibility (PS) -18500 + (NN) -3553 + (LL) 3064
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -138006.0 ( -104.71 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1PVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PVM-query.scw
PDB file :
Tito_Scwrl_1PVM.pdb
: