Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQFLKDNFSLEGKVALITGASYGIGFSIATAFARAGATIVFNDIKQELVDKGISAYKKLGIKAHGYVCDVTDEDGINEMVDKISQDVGVIDILVNNAGIIKRTPMLEMSAADFRQVIDIDLNAPFIVSKAVLPGMIQKGHGKIINICSMMSELGRETVAAYAAAKGGLKMLTKNIASEYGSANIQCNGIGPGYIATPQTAPLRERQDDGSRHPFDQFIIAKTPAARWGEAEDLGAPAIFLASDASNFINGHILYVDGGILAYIGKQPQ
4BNV Chain:B ((23-266))
---------MSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGI------------EWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVG-----GQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREA--------LLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM-------
General information:
TITO was launched using:
RESULT:
Template:
4BNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180489 for 1943 contacts (-92.9/contact) +
2D Compatibility (PS) -24323 + (NN) -5460 + (LL) 3160
1D Compatibility (HY) -16000 + (ID) 4400
Total energy: -227512.0 ( -117.09 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4BNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNV-query.scw
PDB file :
Tito_Scwrl_4BNV.pdb
: