Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQKQVKISGKSKENMSLLKHLKGDVQGKELVIEDSIVNERWKQVLKEKIDIEHDLFNYQKNREISKVPFLPVDRLITNDEVEDILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLKVIEDACQGIGLTDLG-K--YADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFEVNVKNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTE----DRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVIKQEIGV
1MDO Chain:A ((18-384))-------------------------------------------------------------------------------MGAEELAAVKTVLDSGWITTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVD--QAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQAMADLPFQP-LSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKT-KGIGTGLHFRA-AHTQKYYRE--RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG-----


General information:
TITO was launched using:
RESULT:

Template: 1MDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1987 -206360 -103.85 -591.29
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -103.85
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.524

(partial model without unconserved sides chains):
PDB file : Tito_1MDO.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1MDO-query.scw
PDB file : Tito_Scwrl_1MDO.pdb: