Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLTDKTVLITGGASGIGYAAVQAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYTAQ
2HSD Chain:B ((2-242))-DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR-ELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPN--------TPMGRVGEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT--


General information:
TITO was launched using:
RESULT:

Template: 2HSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1408 -125353 -89.03 -520.13
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -89.03
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.485

(partial model without unconserved sides chains):
PDB file : Tito_2HSD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2HSD-query.scw
PDB file : Tito_Scwrl_2HSD.pdb: