Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETK-AFDQIDNAPEERQRGITINIAHVEYQTDK-----------RHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHVLLARQVGVPYILVALNKADAVDDEELLELVEMEVREL--LAAQEFDEDAPVVRVSALKALEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGT--------VVTGRVERGVINVNEEVEIV-GIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGTTTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGLRFAIREGGRTVGAGRVTKIIK |
| 4M53 Chain:A ((3-249)) | -----WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPE----------AYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS----QYRQIKQFTKGTWAENVPIIPVSALHKI--------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLR-------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4M53.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60000 for 1633 contacts (-36.7/contact) +
2D Compatibility (PS) -24339 + (NN) -13010 + (LL) 10400
1D Compatibility (HY) -20800 + (ID) 4300
Total energy: -112049.0 ( -68.62 by residue)
QMean score : 0.414
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