Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTAAGLSGIDLTDLDNFADGFPHHLFAIHRREAPVYWHRPTEHTPDGEGFWSVATYAETLEVLRDPVTYS----SVTGGQRRFGGTVLQDLPVAGQ-VLNMMDDPRHTRIRRLVSSGLTPRMIRRVEDDLRRRARGLLDGVEPGAPFDFVVEIAAELPMQMICILLGVPETDRHWLFEAVEPGFDFRGSRRATM---PRLNVEDAGSRLYTYALELIAGKRAEPADDMLSVVANATIDDPDAPALSDAELYLFFHLLFSAGAETTRNSIAGGLLALAENPDQLQTLRSDFELLPTAIEEIVRWTSP-SPSKRRTASRAVSLGGQPIEAGQKVVVWEGSANRDPSVFDRADEFDITRKPNPHLGFGQGVHYCLGANLARLELRVLFEELLSRFGSVRVVEPAEWTRSNRHTGIRHLVVELRGG |
3VRM Chain:A ((22-366)) | ----------------------PHPAYAALRAEDPVR----KLALPDGP-VWLLTRYADVREAFVDPRLSKDWRHTLPEDQR-------ADMPATPTPMMILMDPPDHTRLRKLVGRSFAVRRMNELEPRITEIADGLLAGLPTDGPVDLMREYAFQIPVQVICELLGVPAEDRD----------DFSAWSSVLVDDSPADDKNAAMGKLHGYLSDLLERKRTEPDDALLSSL--LAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASGGVFFGHGIHFCLGAQLARLEGRVAIGRLFA-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147624 for 2625 contacts (-56.2/contact) +
2D Compatibility (PS) -37013 + (NN) -25551 + (LL) 4140
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -237298.0 ( -90.40 by residue)
QMean score : 0.508
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