Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
3NRC Chain:A ((22-277))
-GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-QFKDRVEKLCAEF--NPAAVLPCDVISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYHCVSMG-----
General information:
TITO was launched using:
RESULT:
Template:
3NRC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178468 for 2253 contacts (-79.2/contact) +
2D Compatibility (PS) -28329 + (NN) -13324 + (LL) -260
1D Compatibility (HY) -26800 + (ID) 7850
Total energy: -255031.0 ( -113.20 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3NRC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NRC-query.scw
PDB file :
Tito_Scwrl_3NRC.pdb
: