Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTSAWNEEWRRRRLPAL-AGQEWDLIVVGGGISGAGILREAARR-GW-RCLLLEQRDFAWGTSSRSSKMVHGGLRYIAKGQWRLTRDSVRERQRLLGEA--PGLVEPLSFVMAHYRGGFPGPRLFGGLLSVYDALAGRR-NHRFYDAAALRYLAPGLKEQR-----LLGGTRFFD-AVTDDARLVLRVLAEARHDGGEAFNGMRVRELLREGGQVVGLRAEDRESGELFDFRCRALALATGAWADELRQP-GGSEHIRPLRGSHLLLPAWRLPVAHAFSFMHATDRRPVFVFPW-EGATVVGTTDLDHRDGLGEDARISRAELDYLLAACAQQFPAAAIEARDVLSTWAGVRPVVSSGDDSGKPSDEKREHVLWREPGCVTLAG---GKLTTFRPLAVEVLQACAPLLGRTVTDDGAAVFGACEGPLIDGLGSGQRRRLAGRYGRDLVRLKRLVDTLGTDCVGASETLWAELAFAAEAEMVLHLDDLLLRRTRLGLLLPGGGAAYLPRIRALCQARLGWDDPRWEREQQAYLDLWRRHYSLPV |
| 2GAG Chain:B ((12-376)) | ------------LWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDE--SAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESV-----RRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTR------GTIHAGKVALAGAGHSSVLAEMAGFELPIQSHPLQALVSELFE-PVHPTVVMS---NHIHVYVSQAHKGELVMGAGIDSY-NG-Y-GQRGAFHVIQEQMAAAVELFPIFA--RAHVLRTWGGIVDTTMDASPIISKT-----P----IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDE--------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162537 for 3068 contacts (-53.0/contact) +
2D Compatibility (PS) -36764 + (NN) -2834 + (LL) 12324
1D Compatibility (HY) -10000 + (ID) 2900
Total energy: -202711.0 ( -66.07 by residue)
QMean score : 0.368
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