Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVERLTVDPRELQRDKPSYTIDTLESVRAEL-AADDQLFMLIGWDAFCGLPTWHRWEALLDHCHIVVLQRPDADSEPPESL-RDLLAARSVADPQAL-KGPGGQITFVWQTPLAVSATQIRALLGAGRSVRFLVPDAVLNYIEAHHLYRAPH
1K4M Chain:A ((1-213))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGP-DVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR---
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153908 for 1657 contacts (-92.9/contact) +
2D Compatibility (PS) -22735 + (NN) -12673 + (LL) 192
1D Compatibility (HY) -15600 + (ID) 4050
Total energy: -208774.0 ( -126.00 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: