Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLKDKVIIITGGCQGLGRAMGEYLAGKGARLALVDLNRERLDEAVAACKAAG---GDARAYVCNVADEEQVTHMVAQVASDFG-AINGLVNNAGILRDGLTIKVKDGQLSKMSLAQWQSVIDVNLTGVFLCTREVAAKMIELKNEGAIVNISSI-SRAGNMGQANYSAAKAGVAADTVVWAKELARYGIRVAGVAPGFIETEMTAGMKPEALEKMTAGIPLKRMGKPVEIAHSVAYIFEND--YYTGRVLELDGGLRL
4CQM Chain:A ((8-259))
-RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL----PPRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEF--------LLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGL--
General information:
TITO was launched using:
RESULT:
Template:
4CQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154235 for 2113 contacts (-73.0/contact) +
2D Compatibility (PS) -25684 + (NN) -5357 + (LL) 1112
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -205664.0 ( -97.33 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_4CQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CQM-query.scw
PDB file :
Tito_Scwrl_4CQM.pdb
: