Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRRILSILVFAIMLAGCSSNASTEKQHAGGEKTVKAEPQSTSSQKDSTDDYQPNSQVTDDRTLHKVGQTFSDDKGKAVLKDIKQVNKTYKIGDVELTVKEMKLIHLRPDYSMIDYFHELTHDEEFDFVKVFVDIK--------NTSTKKV-------NVAPIALMKT-------NTGETFDWNKD-----IYLEELNGELEGGAEKSGNLGFIVNASSGH--AHDKAAD----AEKKTKEIK-WIEITTSDVFDHNHKK----------ISDAQKIKIKF--
4CIJ Chain:A ((1-267))MSGLKPCVDWLQVTFK-TGQDSVKKCVEKLEKVFEILGLN-------EAEFLP---LKNGKYGYKQGVAFQGNPVLAVYYDGADDMG----IHVEMTGQGCRLFELHTSINWYELFYRLVYEYEVNITRLDVAVDDFKGYFKINTLVKKLKDDEVTSRFKKARHIENIVIEGGETIGHTLYFGAPSSDIQVRFYEKNVQMGMDIDVWNRTEIQLRDDRAHVVAQIIADDVLPLGEIVAGLLRNYIQFRTRKATDKNKKRWPLARFWLNFLGDVQPLRIAKQM


General information:
TITO was launched using:
RESULT:

Template: 4CIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 999 -67640 -67.71 -306.06
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -67.71
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.238

(partial model without unconserved sides chains):
PDB file : Tito_4CIJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4CIJ-query.scw
PDB file : Tito_Scwrl_4CIJ.pdb: