Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
3Q3J Chain:B ((27-157))
--RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQK---
General information:
TITO was launched using:
RESULT:
Template:
3Q3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67310 for 913 contacts (-73.7/contact) +
2D Compatibility (PS) -14014 + (NN) -6413 + (LL) 28
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -102709.0 ( -112.50 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_3Q3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q3J-query.scw
PDB file :
Tito_Scwrl_3Q3J.pdb
: