Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG-LKNVFDEAILAALEPPEPKKSRRCVLL
3Q3J Chain:B ((27-203))
--RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET--QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN-------------
General information:
TITO was launched using:
RESULT:
Template:
3Q3J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134812 for 1422 contacts (-94.8/contact) +
2D Compatibility (PS) -18700 + (NN) -8630 + (LL) 568
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -180524.0 ( -126.95 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3Q3J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q3J-query.scw
PDB file :
Tito_Scwrl_3Q3J.pdb
: