Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILDENSPITVHYNHKMVSEEPMG----YVINSTVIWNAINNNFLNKLNIYSLHSYRTITCDAGYVEVTLGNNQKLISSLLICAEGKNSKLPGLFSMSIIKFDYKQSSIVFNV---KHELHHQNL--AVEQFFPGGP-----FAILPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEVKLDGERKSYPLSFASAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV- |
| 4H2Q Chain:A ((10-379)) | KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGA--GIYLWHNGLRVLEGLGALDDVLQGSHTP---------PTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG--RLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPID---LEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--------GSS------VEDALVAWETRIRPITDRCQALSGDYAANRSLSKGNMFTPAALEAARYDPLRRVYSWPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4H2Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158171 for 3145 contacts (-50.3/contact) +
2D Compatibility (PS) -36883 + (NN) -2418 + (LL) 2652
1D Compatibility (HY) -6400 + (ID) 3300
Total energy: -204520.0 ( -65.03 by residue)
QMean score : 0.364
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