Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIE--LNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGEYT---VAYEPIWAIGTGH--VPSNNAIA--EVIEVIQSYTSKKH-----VIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
2VFE Chain:A ((5-236))
--YFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHSERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSAM----
General information:
TITO was launched using:
RESULT:
Template:
2VFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101842 for 1614 contacts (-63.1/contact) +
2D Compatibility (PS) -23413 + (NN) -7384 + (LL) 260
1D Compatibility (HY) -15600 + (ID) 3950
Total energy: -151929.0 ( -94.13 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_2VFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VFE-query.scw
PDB file :
Tito_Scwrl_2VFE.pdb
: