Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIEFKNVSKVY-PNGHVGLKNINLNIEKGEFAVIVGLSGAGKSTLLRSVNRLHDITSGEIFIQGKSITKAHGKALLEMRRNIGMIFQHFNLVKRSSVLRNVLSGRVGYHPTWKMVLGLFPKEDKIKAMDALERVNILDKYN----QRSDELSGGQQQRISIARALCQESEIILADEPVASLDPLTTKQVMDDLRKINQELGITILINLHFVDLAKEYGTRIIGLRDGEVVYDGPASE---ATDDVFSEIYGRTIKEDEKLGVN
2FGJ Chain:D ((8-242))
---ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL---RRQVGVVLQDNVLLNR-SIIDNISLANPGMS-----VEKVIYAAKLAGAHDFISELR--EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY-------------
General information:
TITO was launched using:
RESULT:
Template:
2FGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120247 for 1762 contacts (-68.2/contact) +
2D Compatibility (PS) -24124 + (NN) -3810 + (LL) 2412
1D Compatibility (HY) -17600 + (ID) 3900
Total energy: -167269.0 ( -94.93 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2FGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGJ-query.scw
PDB file :
Tito_Scwrl_2FGJ.pdb
: