Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENF--VTHAKNGY-YDGITFHRVINDFMIQGGDPTA-TGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2RMB Chain:M ((18-140))
------------------------GRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK----------------------------TEWLDGKHVVFGKVKEGMNIVE--------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37737 for 866 contacts (-43.6/contact) +
2D Compatibility (PS) -12439 + (NN) -6031 + (LL) 4180
1D Compatibility (HY) -8000 + (ID) 3200
Total energy: -63227.0 ( -73.01 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2RMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMB-query.scw
PDB file :
Tito_Scwrl_2RMB.pdb
: