Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLNNYSLKVKN----KQLVDNCDLNFYLGQINHIVGKNGVGKSLLAKDFL--LNNSGNIPKSISQNVTLISSSSNIPND-------ITKDFLLSLLKSKFENNRQTFDKIYNILNIEAIPSNVLLKNLSDGQKQKLKLLSFLLEDHDLIILDEVTNALDKKTVNEIYEFLNDFIQSHQTKTIINITHNLSDLSALPG-KYFIFKDLQIEEYQSKEEVINDYINL
2PJZ Chain:A ((2-216))
IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES----
General information:
TITO was launched using:
RESULT:
Template:
2PJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76852 for 1568 contacts (-49.0/contact) +
2D Compatibility (PS) -21199 + (NN) -5508 + (LL) 1028
1D Compatibility (HY) -8400 + (ID) 2150
Total energy: -113081.0 ( -72.12 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_2PJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PJZ-query.scw
PDB file :
Tito_Scwrl_2PJZ.pdb
: