Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
3CIO Chain:A ((78-284))
--------------DNPADSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKRASTAY---------
General information:
TITO was launched using:
RESULT:
Template:
3CIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90673 for 1710 contacts (-53.0/contact) +
2D Compatibility (PS) -23377 + (NN) -19873 + (LL) 1316
1D Compatibility (HY) -12400 + (ID) 3150
Total energy: -148157.0 ( -86.64 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_3CIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIO-query.scw
PDB file :
Tito_Scwrl_3CIO.pdb
: