Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
2VXN Chain:A ((6-251))
--QPIAAANWKCNGTTASIEKLVQVFNEHTISHD-VQCVVAPTFVHIPLVQAKLRNPKYVISAQNA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFRDIIDATR
General information:
TITO was launched using:
RESULT:
Template:
2VXN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100939 for 2127 contacts (-47.5/contact) +
2D Compatibility (PS) -27050 + (NN) -13381 + (LL) 688
1D Compatibility (HY) -17200 + (ID) 5250
Total energy: -163132.0 ( -76.70 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2VXN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXN-query.scw
PDB file :
Tito_Scwrl_2VXN.pdb
: