Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELVNVSKKIQDK--LILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMT--LKKEVLGFIFQNYLLMENETVLENLSITGG--------ENRKLMIEHLEEVGMDESY---LAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR
2ONJ Chain:B ((340-553))
-IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG---HNIKDFLTGSLRNQI-GLVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-RTTLIVAHRLSTITHADKIVVIENGHI-
General information:
TITO was launched using:
RESULT:
Template:
2ONJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100277 for 1573 contacts (-63.7/contact) +
2D Compatibility (PS) -21628 + (NN) -11659 + (LL) 820
1D Compatibility (HY) -16800 + (ID) 3550
Total energy: -153094.0 ( -97.33 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_2ONJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ONJ-query.scw
PDB file :
Tito_Scwrl_2ONJ.pdb
: