Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLVAT-APRVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDF-RGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS---------------------------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRD-AHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTD-VGLEVKRLTGKLGADSIIETSGNAAALQAAL-RGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
| 1CDO Chain:A ((9-374)) | CKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCH-TDLYHLFEGKHK------------------------DGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQ-IA--VAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRP--IQLIAGRTWKGSMFGGF--------KGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDL-MKHGK--CIRTVLSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138554 for 2729 contacts (-50.8/contact) +
2D Compatibility (PS) -34260 + (NN) -13891 + (LL) 1576
1D Compatibility (HY) -7200 + (ID) 3100
Total energy: -195429.0 ( -71.61 by residue)
QMean score : 0.450
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