Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMAS-R-----ADVSLAKDLQDTLHANQNYCVGMAANMIGSLKRVIIINVG----------ITNLVMFNPVLVAKS-DPYETEESCLSLVG-CRSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
1Y6H Chain:A ((1-153))
SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHA--EGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILY
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79078 for 1030 contacts (-76.8/contact) +
2D Compatibility (PS) -14094 + (NN) 1934 + (LL) 40
1D Compatibility (HY) -8000 + (ID) 1900
Total energy: -101098.0 ( -98.15 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: