Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKEEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF
1BM9 Chain:A ((3-122))--EEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF


General information:
TITO was launched using:
RESULT:

Template: 1BM9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 341 -36505 -107.05 -304.21
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.99

3D Compatibility (PKB) : -107.05
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.99
QMean score : 0.580

(partial model without unconserved sides chains):
PDB file : Tito_1BM9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1BM9-query.scw
PDB file : Tito_Scwrl_1BM9.pdb: