Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLT-ELVSL---QSQHPDFLRLFYLLSMERS-QDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGKADLVVAELTAFAVALSDGVYFAGHLEP--DTTDVERMYRRLRQALEALIPVLLEET
3G1L Chain:A ((42-234))
-----------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPA--DTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLP--AH----ELATALNLMNERTLFASFAGEQPSV-PEARVLDTLVHIWVTSIYGE----
General information:
TITO was launched using:
RESULT:
Template:
3G1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81506 for 1310 contacts (-62.2/contact) +
2D Compatibility (PS) -20313 + (NN) -8889 + (LL) 1920
1D Compatibility (HY) -4800 + (ID) 1650
Total energy: -115238.0 ( -87.97 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_3G1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1L-query.scw
PDB file :
Tito_Scwrl_3G1L.pdb
: