Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQD----H-AEVSVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYTDALPEMP---------------EPAIEVEPPVC-D--CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
3RIY Chain:A ((22-273))
KHIVIISGAGVSAESGVPTFRGA-GGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEALA-------
General information:
TITO was launched using:
RESULT:
Template:
3RIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109095 for 1906 contacts (-57.2/contact) +
2D Compatibility (PS) -24864 + (NN) -13977 + (LL) 760
1D Compatibility (HY) -16000 + (ID) 4550
Total energy: -167726.0 ( -88.00 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3RIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RIY-query.scw
PDB file :
Tito_Scwrl_3RIY.pdb
: