Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRSTPPASAGRSTPPALAGHSTPPALAGHSTLCGRPVAGDRALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGVDPAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGETLGVDLTERLEGTLAATALAAAAGARMFRVHEVAATRRVLEMVASIQGVRPPTRTVRGLA |
| 2VP8 Chain:A ((27-311)) | --------------------------AGHSTLCGRPVAGDRALIMAIVN--------------DAAARDAVHRAVADGADVIDVG----------DVDTEITRLVPFIEWLRGAYPDQLISVDTWRAQVAKAACAAGADLINDTWGGVDPAMPEVAAEFGAGLVCAHT-------------YGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALS---------------RLEGTLAATALAAAAGARMFRVHEVAATRRVLEMVASIQGVRPPT------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VP8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195327 for 1955 contacts (-99.9/contact) +
2D Compatibility (PS) -26556 + (NN) -18526 + (LL) 2436
1D Compatibility (HY) -30800 + (ID) 11650
Total energy: -280423.0 ( -143.44 by residue)
QMean score : 0.584
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