Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHG----STFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLADL------IGDGAVALRGLGWWADVDI-------ERALAIGTDMSMRLADRGVLLKDT----YGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
1D7V Chain:A ((240-432))
LILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH--ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGD----VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA--
General information:
TITO was launched using:
RESULT:
Template:
1D7V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105352 for 1205 contacts (-87.4/contact) +
2D Compatibility (PS) -18240 + (NN) -1666 + (LL) -60
1D Compatibility (HY) -12000 + (ID) 3350
Total energy: -140668.0 ( -116.74 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1D7V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D7V-query.scw
PDB file :
Tito_Scwrl_1D7V.pdb
: