Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLEGKVAFITGAARGLGRAHAVRLAADGANIIAVDICEQIASVPYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQAGLDEFGRLDIVVANAGIA----MMQAGDDGWRDVIDVNLTGVFHTVQVAIPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYANHLAPQNIRVNSVHPCGVDTPMINNEFFQQWLTTADMDAPHNLGNALPVELVQPTDIANAVAWLASEEARYVTGVTLPVDAGFVNKR
4I08 Chain:A ((10-248))
-----LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQ------------AISDYLGDNGKGMAL---NVTNPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVGTMG----NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDM-NDE--QRTATLAQVPAGR---------LGDPREIASAVAFLASPEAAYITGETLHVNGGM----
General information:
TITO was launched using:
RESULT:
Template:
4I08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177049 for 1972 contacts (-89.8/contact) +
2D Compatibility (PS) -24816 + (NN) -6036 + (LL) 1728
1D Compatibility (HY) -14400 + (ID) 4700
Total energy: -225273.0 ( -114.24 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_4I08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I08-query.scw
PDB file :
Tito_Scwrl_4I08.pdb
: