Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSEDKSEPR--VFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
3PN4 Chain:A ((1-165))
---MEIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE
General information:
TITO was launched using:
RESULT:
Template:
3PN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65264 for 1204 contacts (-54.2/contact) +
2D Compatibility (PS) -17473 + (NN) -5938 + (LL) 556
1D Compatibility (HY) -16800 + (ID) 3100
Total energy: -108019.0 ( -89.72 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3PN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PN4-query.scw
PDB file :
Tito_Scwrl_3PN4.pdb
: