Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNGSLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
4M89 Chain:B ((2-257))
-GFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDS--ELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGYSINALS-----
General information:
TITO was launched using:
RESULT:
Template:
4M89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183508 for 2264 contacts (-81.1/contact) +
2D Compatibility (PS) -28294 + (NN) -14091 + (LL) -120
1D Compatibility (HY) -26800 + (ID) 8050
Total energy: -260863.0 ( -115.22 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4M89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M89-query.scw
PDB file :
Tito_Scwrl_4M89.pdb
: