Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDLVKRASLLRRDSVHGPF-DGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEAT-ICNDNRVVLYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
3ZDF Chain:A ((21-350)) | ----------------------------------------------------------------------------------------------------------------VAINGFGRIGRNFMRCWLQRKANS-----KLEIVGINDTSDPRTNAHLLKYDSMLGIFQDAEITADDD--CIYAGGHAVKCVSDRNPENLPWSAWGID--LVIEATGVFTSREGASKHLSA-GAKKVLITAPGKGNIPTYVVGVNHHTYDPSEDIVSNASCTTNCLAPIVKVLHEAFGIQQGMMTTTHSYTGDQRLLDASHRDLRRARAAAMNIVPTSTGAAKAVGLVIPELQGKLNGIALRVPTPNVSVVDFVAQVEKPTIAEQVNQVIKEAS--ETTMKGIIHYSELELVSSDYRGHNASSILDASLTMVLGGNLVKVVAWYDNEWGYSQRVLDLAEHMA--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ZDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196824 for 2896 contacts (-68.0/contact) +
2D Compatibility (PS) -35583 + (NN) -13786 + (LL) 8204
1D Compatibility (HY) -22400 + (ID) 6300
Total energy: -266689.0 ( -92.09 by residue)
QMean score : 0.541
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