Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGLLDLLEIRKAYG---DTRVLEGVALSLAPGEVVSLLGPSGCGKSTLLRIAAGLDDDFQGTVERNPILGFGPDGENGRS-------GGIGVVFQEPRLLPWLTVAQNVGFA--DGWLEDEHWVERLLADVGLA---------------GCGGLLPKQLSGGMAQRAAIARGLYGRPQVLLLDEPFSAVDAFTRMRLQDLLQDVVQNYEISVLLVTHDLDEAFYLADRVLLMGGRPGHIRREFHVPLARPRDRRAVELAYLRGEALTEMQRAHVL |
4AYT Chain:A ((340-543)) | --GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISL--------DGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRV-AEVANAVAFIRNFPQGFNTVVGEKGVL---LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGR--TVLVIAHRLS------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88764 for 1307 contacts (-67.9/contact) +
2D Compatibility (PS) -19676 + (NN) -10759 + (LL) 5508
1D Compatibility (HY) -12800 + (ID) 3450
Total energy: -129941.0 ( -99.42 by residue)
QMean score : 0.456
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