Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLHTDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASL--HNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERVDRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPLGGCC
3UCJ Chain:B ((7-206))
-ADLSPLLEANRKWADECAAKDSTYFSKVAGSQAPEYLYIGCADSRVSPAQLFNMAPGEVFVQRNVGNLVSNKDLNCMSCLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKTAGVTNLWISDVREVRDKNAAKLHGL-SADDAWDKMVELNVEAQVFNVCASPIVQAAWARGQPLSVHGIVYTPGTGLVKELIKPITGME---------------
General information:
TITO was launched using:
RESULT:
Template:
3UCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148886 for 1443 contacts (-103.2/contact) +
2D Compatibility (PS) -20848 + (NN) -4124 + (LL) 348
1D Compatibility (HY) -22000 + (ID) 4350
Total energy: -199860.0 ( -138.50 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_3UCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UCJ-query.scw
PDB file :
Tito_Scwrl_3UCJ.pdb
: