Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYVVLEGVDGAGKSTQVGLLKDRFK----NALFTKEPG-GTRMG-ESLRRIALNE--N--ISELARAFLFLSDRAEHIESVIKPALKEKKLIISDRSLISGMAYSQFS---------SLELNLLA---TQSVLPEKIILLLINKENLKQRLSLKSLDK----IEN--QGIEKLLTIQQKLKTHAYALQEKFGCEVLELDAQKSAKNLHEKIATFIECVV
1GTV Chain:A ((1-208))
MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT-IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQG---WGGRWLVVGADVDPGRLAATLA-------
General information:
TITO was launched using:
RESULT:
Template:
1GTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46893 for 1432 contacts (-32.7/contact) +
2D Compatibility (PS) -19968 + (NN) -10234 + (LL) 1412
1D Compatibility (HY) -800 + (ID) 2250
Total energy: -78733.0 ( -54.98 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1GTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GTV-query.scw
PDB file :
Tito_Scwrl_1GTV.pdb
: