Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSVSVAVIEKNNLPRIID------DNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILDENSPITVHYNHKMVSEEPMGYVINSTVIWNAINNNFLNK-----LNIYSLHSYRTITCDAG--YVEVTLGNNQKLISSLLICAEGKNSKLPGLF--------SMSIIKFDYKQSSIVFNVKHEL-----HHQNLAVEQFFPGGPFAI--LPMKSGYTSSIVWTEKSEISKMLMNLSEEEFIIELKKRFGSYLGEV-------KLDGERKSYPLSFASAKKLYK-SRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLM--AVENSKFLKKRFIRHAMGFV |
| 4J33 Chain:A ((22-411)) | MSESVAIIGAGLVGCLAALAFSKEGYNVTLYDFRQDPRLDTTKNKNLKSINLAISARGIDALKSID-----PDACEHILQDMIPM--KGRMIHDLKGRQESQLYGEAINSIN-RSVLNNSLLDELEKSTTELKFGHKLVKIEWTDDKQICHFAIGTPHTEKYDFVIGCDGAYSATRSQMQRKVEMDFSQEYMNLRYIELYIPPTEEFKPNYGGNFAIAPDHLHIWPRHKFMLIALANSDGSFTSTFFGSKDQISDLIT--SKSRVREFLIENFPDIINIMDLDDAVKRFITYPKESLVCVNCKPYDVPGGKAILLGDAAHAMVPFYGQGMNCGFEDVRILMALLKKHS---------------------GDRSRAFTEYTQTRHKDLVSITELAKRNYKEMSHDVTSKRFLLRK--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J33.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138977 for 2786 contacts (-49.9/contact) +
2D Compatibility (PS) -37247 + (NN) -9242 + (LL) 3424
1D Compatibility (HY) -14000 + (ID) 3550
Total energy: -199592.0 ( -71.64 by residue)
QMean score : 0.363
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