Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGDFAFKIIKQSNSARAGTIKTPSGNIETPAFIFCATRAAIKAADIERISEAGTQIILSNTYHLMLQPGENTVAKLGGLRKMMGWNGPMLTDSGGYQIFSLGHGSVSEEIKGIRKKQKTLIKIDEDGAIFRSYINGKAYCLTPERSIQIQQKLGADLILVLDECTPFHVSKEYTRRSMLMSHKWAERSLNEFG--KDDNGKQALYGISQGGVYRDLRRESCYFINNLPFFGQAIGG-SLGRSKEQMYDVVSFTMEHLKKDRPTHLLGIGRIVDIFYAVEAGIDTFDCVHPTRLARHGGALIKVKNRNTISSRYKEHINLRNQQFELDGNPIEGDCLCFTCRKYSRAYIHHLLKTKELLAYTLITIHNVFFMNKLMKSIRQAILDDRLDQEKSNWVGEV |
| 4GCX Chain:A ((11-372)) | -RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMS--------------------TKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFT-----------WDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GCX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -195040 for 3171 contacts (-61.5/contact) +
2D Compatibility (PS) -37853 + (NN) -10889 + (LL) 1928
1D Compatibility (HY) -26400 + (ID) 7850
Total energy: -276104.0 ( -87.07 by residue)
QMean score : 0.534
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