Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
5C4Z Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKHMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
5C4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50686 for 1037 contacts (-48.9/contact) +
2D Compatibility (PS) -13800 + (NN) -3111 + (LL) 6020
1D Compatibility (HY) -15200 + (ID) 6150
Total energy: -82927.0 ( -79.97 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_5C4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5C4Z-query.scw
PDB file :
Tito_Scwrl_5C4Z.pdb
: