Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDG-PILTTKIEEE
4FLJ Chain:A ((53-297))
----SSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGAR-KLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAP-NVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLD--
General information:
TITO was launched using:
RESULT:
Template:
4FLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100659 for 2137 contacts (-47.1/contact) +
2D Compatibility (PS) -27116 + (NN) -13762 + (LL) 1140
1D Compatibility (HY) -13600 + (ID) 3950
Total energy: -157947.0 ( -73.91 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4FLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FLJ-query.scw
PDB file :
Tito_Scwrl_4FLJ.pdb
: