Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVIIAANNLCLQYQQNEPVI-KHANLRIKRKDFVFISGPSGSGKSTL---LRSFY----GDLKVFSGKLEVCNINMNNASKSTILDLRKNIGVVFQDYKLIQDYTIEQNIKLPMVICGIKKEECHLQLEKLLGHID----LRHKANRYPKE----LSGGEQQRVAMARAMANCPELILADEPTGNLDDYSSDKIWSLLRGMNTQLNA-TIVVVTHKFPKNFSAYHRKFYIEEGEVYEYS
2FGK Chain:C ((8-223))
----ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW----------LRRQVGVVLQDNVLLNRSIID-NISLAN--PGMSVEKV-IYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSAL-DYESEHV--IMRNMHKICKGRTVIIIAHRLSTVKNA-DRIIVMEKGKIVEQG
General information:
TITO was launched using:
RESULT:
Template:
2FGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79037 for 1460 contacts (-54.1/contact) +
2D Compatibility (PS) -21259 + (NN) -4060 + (LL) 1628
1D Compatibility (HY) -18400 + (ID) 3700
Total energy: -124828.0 ( -85.50 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_2FGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FGK-query.scw
PDB file :
Tito_Scwrl_2FGK.pdb
: