Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKIIAIDIDGTLLNDT-HEITPAVRDSIKAAKAKGVKVVLCTGRPLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAENVNVTYFDGKNMYVPSRKITEITCQDSL-LLGTPLYHLPVEEAPESIHVSKVMLL-DSPEKITDVIKKLPENIKEKFYVVRSVPYNLEFLQKGVNKGSALASLADKLGVDQSEVMSIGDQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR
3R4C Chain:A ((11-266))
MIKVLLLDVDGTLLSFETHKVSQSSIDALKKVHDSGIKIVIATGRAASDLHEID-AVP----YDGVIALNGAECVLR-DGSVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVNRLTPT-VEQIAGIVEHPVPP-VVDIEEMFERKECCQLCFYFDEE-AE----QKVMPLLS-GLSATRWHPLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDNSGLYKALKHFG---
General information:
TITO was launched using:
RESULT:
Template:
3R4C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146190 for 2158 contacts (-67.7/contact) +
2D Compatibility (PS) -27940 + (NN) -10701 + (LL) 1704
1D Compatibility (HY) -15600 + (ID) 3150
Total energy: -201877.0 ( -93.55 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3R4C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R4C-query.scw
PDB file :
Tito_Scwrl_3R4C.pdb
: