Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSD-VDTFIFPSMGTLETTANLLAGTSF--GFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQ---VTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDETL--VRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG |
| 3GVG Chain:B ((25-278)) | -RKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHL---DVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAA---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -131072 for 2133 contacts (-61.4/contact) +
2D Compatibility (PS) -26621 + (NN) -8164 + (LL) 380
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -185527.0 ( -86.98 by residue)
QMean score : 0.554
|
|
|