Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METVLKAHKVRKVYGSKGNLFSALGSISLEIQKGSFVGIMGPSGAGKSTLLNVLSSIDKPTSGEIEIGGKQISTMNGK--ELAVFRRDQLGF-------IFQDYNLLDTMTVKDNIV-LPLALAHIKQAEIDQRFEIIARQFGIFE-LRNKYPTEISGGQKQRTAVCRAMITEPTLIFADEPTGALDSKSATNLLEGLSQAKDVRDSTIMMVTHD-AFAASYCERIMFIKDGEIFTEIYRGTSSRKQFFQKVLDVLALLGGGENDVI
1B0U Chain:A ((5-234))
--NKLHVIDLHKRYGG----HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1B0U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125191 for 1712 contacts (-73.1/contact) +
2D Compatibility (PS) -23613 + (NN) -6545 + (LL) 2428
1D Compatibility (HY) -18000 + (ID) 3650
Total energy: -174571.0 ( -101.97 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_1B0U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B0U-query.scw
PDB file :
Tito_Scwrl_1B0U.pdb
: