Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDG--FLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
2BBW Chain:B ((28-220))
LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV---ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI-----CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTE----------------
General information:
TITO was launched using:
RESULT:
Template:
2BBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26245 for 1354 contacts (-19.4/contact) +
2D Compatibility (PS) -21393 + (NN) -14410 + (LL) 1600
1D Compatibility (HY) -14800 + (ID) 3850
Total energy: -79098.0 ( -58.42 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_2BBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BBW-query.scw
PDB file :
Tito_Scwrl_2BBW.pdb
: